Because the list of articles, thesis, books and grey literature became too extensive over the past few years, only the refereed articles are presented here. A comprehensive list of thesis titles and authors will be available as soon as possible. Copies (in pdf format) of articles are available for personal use and will be given upon request.

Cabral, H.N., Fonseca, V.F., Gamito, R., Gonçalves, C.I., Costa, J.L., Erzini, K., Gonçalves, J., Martins, J., Leite, L., Andrade, J.P., Ramos, S., Bordalo, A., Amorim, E., Neto, J.M., Marques, J.C., Rebelo, J.E., Silva, C., Castro, N., Almeida, P.R., Domingos, I., Gordo, L.S., Costa, M.J. Ecological quality assessment of transitional waters based on fish assemblages in Portuguese estuaries: The Estuarine Fish Assessment Index (EFAI). Ecological Indicators (in press). 

(doi:10.1016/j.ecolind.2011.08.005)

Sykes, A.V., Domingues, P.M., Marquéz, L. & Andrade, J.P. (2011), “The effects of tank colours on growth and survival of cuttlefish (Sepia officinalis, Linnaeus 1758) hatchlings and juveniles”. Aquaculture Research 42, 441-449.

Caldwell, I.R., Correia, M., Vincent, A.C.J. & Palma, J. (2011),  "Advances in tagging syngnathids, with the effect of dummy tags on behaviour of Hippocampus guttulatus". Journal of Fish Biology 78, 1769-1785.

Palma, J., D. P. Bureau & Andrade, J.P. (2011). "Effect of different Artemia enrichments and feeding protocol for rearing juvenile long snout seahorse, Hippocampus guttulatus." Aquaculture 318, 439-444.

Hormiga, J.A., Almansa, E., Sykes, A.V. & Torres, N. (2010). Model based optimization of feeding regimens in aquaculture: Application to the improvement of Octopus vulgaris paralarvae viability in captivity. Journal of Biotechnology 149, 209-214.

António V. Sykes, Ana R. Oliveira, Pedro M. Domingues, Carlos M. Cardoso, José P. Andrade & Maria L. Nunes, 2009. Assessment of European cuttlefish (Sepia officinalis, L.) nutritional value and freshness under ice storage using a developed Quality Index Method (QIM) and biochemical methods. LWT - Food Science and Technology 42 (1), 424-432 

António V. Sykes, Eduardo Almansa, António Lorenzo & José P. Andrade, 2009. Lipid characterization of both wild and cultured eggs of cuttlefish (Sepia officinalis) throughout the embryonic development. Aquaculture Nutrition 15, 38-53

Esteves, E., Pina, T. & Andrade, J.P., 2009. Diel and seasonal changes in nutritional condition of the anadromous Twaite shad Alosa fallax fallax (Lacepede, 1803) larvae. Ecology of Freshwater Fish 18, 132-144

Palma, J., Bureau, D. P., Correia, M. & Andrade, J. P., 2009. Effect of temperature, density and early weaning in survival and growth of Palaemonetes varians larvae. Aquaculture Research 40 (13), 1468 - 1473

Miguel Correia, Jorge Palma & José Pedro Andrade, 2008. Effects of live prey availability on growth and survival in the early stages of cuttlefish Sepia officinalis (Linnaeus, 1758) life cycle. Aquaculture Research, 39 (1): 33–40

Nunes, M.A., Santos, S., Cordeiro, J.M., Neves, P., Silva, V.S. Sykes, A.V., Morgado, F., Dunant, Y. & Gonçalves, P.P., 2008. Acetylcholine release and choline uptake by cuttlefish (Sepia officinalis) optic lobe synaptosomes. Biological Bulletin, 214: 1-5

Miguel Correia, Jorge Palma, Tad Kirakowski & José P. Andrade, 2008. Effects of prey nutritional quality on growth and survival of juvenile cuttlefish, Sepia officinalis (Linnaeus, 1758). Aquaculture Research, 39: 869-876

Palma, J., Bureau, D. & Andrade, J.P., 2008. Effects of binder type and binder addition on the growth of juvenile Palaemonetes varians and Palaemon elegans (Crustacea: Palaemonidae). Aquaculture International, 16: 427–436

Jorge Palma, Miguel Correia & José Pedro Andrade, 2008. Usefulness of flat bottom tanks on the settlement of spider crab (Maja squinado, Herbst) larvae. Aquaculture Research, 39: 1005-1008

Palma, J., Stockdale, J., Correia, M. & Andrade, J., 2008. Growth and survival of adult long snout seahorse (Hippocampus guttulatus) using frozen diets. Aquaculture, 278: 55–59

Esteves, E. & Andrade, J.P., 2008. Diel and seasonal distribution patterns of eggs, embryos and larvae of Twaite shad Alosa fallax fallax (Lacépède, 1803) in a lowland tidal river. Acta Oecologica, 34: 172-185

Silva, V.S., Nunes, M.A., Cordeiro, J.M., Calejo, A.I., Santos, S., Neves, P., Sykes, A., Morgado, F., Dunant, Y.,  and Gonçalves, P. P., 2007. Comparative effects of aluminum and ouabain on synaptosomal choline uptake, acetylcholine release and (Na+/K+)ATPase. Toxicology  236 (3-17): 158-177

Almansa, E., Domingues, P., Sykes, A., Tejera, N., Lorenzo, A. and Andrade J.P., 2006 The effects of feeding with shrimp or fish fry on growth and mantle lipid composition of juvenile and adult cuttlefish (Sepia officinalis). Aquaculture 256(1-4): 403-413

Koueta, N., Andrade, J.P., von Boletzky, S., 2006. The cuttlefish Sepia officinalis a working model in cephalopod research  Vie et Milieu - Life and environment 56(2): 67-67

Sykes, A.V., Domingues, P.M., Correia, M., Andrade J.P., 2006. Cuttlefish culture - State of the art and future trends. Vie et Milieu - Life and environment, 56(2): 129-137

Sykes, A., Domingues, P. and Andrade J.P., 2006. Effects of using live grass shrimp (Palaemonetes varians) as the only source of food for the culture of cuttlefish, Sepia officinalis (Linnaeus, 1758). Aquaculture International. 14(6) :  551-568

Paiva, V. H., Ramos, J. A., Catry, T., Pedro, P., Medeiros, R., Palma, J. and Andrade J.P., 2006. Influence of environmental factors and energetic value of food on Little Tern Sterna albifrons chick growth and food delivery: Chick diet and early growth parameters differed between birds breeding on natural (sandy beaches) and alternative (salinas) habitats. Bird Study 53(1): 1-11

Catry, T., Ramos, J. A., Martins, J., Peste, F., Trigo, S., Paiva, V. H., Almeida, A., Luís, A., Palma J., Andrade J.P., 2006. Inter-colony and annual differences in the diet and feeding ecology of Little Tern adults and chicks in Portugal. The Condor. 108: 366-376

Correia, M., Domingues, P., Sykes, A. & Andrade, J.P., 2005. Effects of culture density on growth and broodstock management of the cuttlefish, Sepia officinalis (Linnaeus, 1758). Aquaculture 245: 163-173

Bargelloni, L., Alarcon, J.A., Alvarez, M.C., Penzo, E., Magoulas, A., Palma, J., Patarnello, T., 2005. The Atlantic-Mediterranean transition: Discordant genetic patterns in two seabream species, Diplodus puntazzo (Cetti) and Diplodus sargus (L.). Molecular Phylogenetics and Evolution 36: 523-535

Domingues, P.M., Dimarco, F.P., Andrade, J.P. and Lee, P.G., 2005. Effect of artificial diets on growth, survival and condition of adult cuttlefish, Sepia officinalis Linnaeus, 1758. Aquaculture International 13(5): 423-440

Afonso-Dias, I., Reis, C. and Andrade J.P. 2005. Reproductive aspects of Microchirus azevia (Risso, 1810) (Pisces : Soleidae) from the south coast of Portugal. Scientia Marina 69(2): 275-283

Domingues, P.M., Sykes, A., Sommerfield , A., Almansa, E., Lorenzo, A. & J.P. Andrade, 2004. Growth and survival of cuttlefish (Sepia officinalis) of different ages fed crustaceans and fish. Effects of frozen and live prey. Aquaculture 229: 239-254

Palma, J. & Andrade J.P., 2004. Morphological study of Pagrus pagrus, Dentex dentex, and Pagellus bogaraveo (Sparidae) in Eastern Atlantic and Mediterranean Sea. Journal of the Marine Biological Association of the United Kingdom 84: 449-454

Sykes A.V., Domingues P.M. and Andrade J.P., 2004. Nucleic acid derived indices or instantaneous growth rate as tools to determine different nutritional condition in cuttlefish (Sepia officinalis, Linnaeus 1758) hatchlings.  Journal of shellfish research 23(2): 585-591

Chícharo, M.A., Esteves, E., Santos, A.M.P., dos Santos, A., Peliz, Á. & Ré, P. 2003. Are sardine larvae caught off northern Portugal in winter starving? An approach using nutritional conditions. Marine Ecology - Progress Series 257: 303-309.

Domingues, P.M., Poirier, R., Dickel, L., Almansa, E., Sykes, A. &  Andrade, J.P. 2003. Effects of culture density and live prey on growth and survival of juvenile cuttlefish, Sepia officinalis. Aquaculture International 11: 225-242

Domingues, P.M., Sykes, A., Sommerfield , A. &  Andrade, J.P. 2003. The effects of feeding live or frozen prey on growth, survival and the life cycle of the cuttlefish Sepia officinalis (Linnaeus, 1758). Aquaculture International 11: 397-410

Palma, J. , Reis, C. &  Andrade, J.P. 2003. Impact of bivalve dredge fishing on flatfish species in the south coast of Portugal (Algarve). Journal of Sea Research 50: 129-137

Pina, T.; Esteves, E. &  Andrade, J.P. 2003. Gross and histological observations of ovarian and testis development in twaite shad, Alosa fallax fallax, from Rivers Mira and Guadiana (Portugal). Scientia Marina 67(3): 313-322.

Sykes, A., Domingues, P.M., Loyd, M., Sommerfield , A. & Andrade, J.P. 2003. The influence of culture density and enriched environments on the first stage culture of young cuttlefish Sepia officinalis (Linnaeus, 1758). Aquaculture International 11: 531-544

Domingues, P.M., Sykes, A. & Andrade, J.P. 2002. The effects of temperature in the life cycle of two consecutive generations of the cuttlefish Sepia officinalis (Linnaeus, 1758), cultured in the Algarve (South Portugal). Aquaculture International 10: 207-220

Palma, J. &  Andrade, J.P. 2002. Morphological study of Diplodus sargus, Diplodus puntazzo, and Lithognathus mormyrus (Sparidae) in Eastern Atlantic and Mediterranean Sea. Fisheries Research 57(1): 1-8

Quintela J. & Andrade, J.P. 2002. Effects of temperature on gastric evacuation rates of Sepia officinalis (Linnaeus, 1758) in laboratory conditions. Bulletin of Marine Science 71(2): 681-689

Quintela J. & Andrade, J.P. 2002. Diel feeding rhythms, daily ration and gastric evacuation rates of Sepia officinalis (Linnaeus, 1758) in the Ria Formosa Lagoon (South Portugal). Bulletin of Marine Science 71(2): 665-680

Chícharo, M. A., Chícharo, L. M., Galvão, H., Barbosa, A, Marques, M. H., Andrade, J.P., Esteves, E., Miguel, C., Gouveia, C. & Rocha, C. 2001. Status of the Guadiana estuary (South Portugal) during 1996-1998: an ecohydrological approach. Aquatic Ecosystem Health and Management 4: 73-89

Chícharo, L., Chícharo, M.A., Esteves, E., Andrade, J.P. & Morais, P. 2001. Effects of alterations in freshwater supply on the abundance and distribution of Engraulis encrasicolus in the Guadiana estuary and adjacent coastal areas of south Portugal. Ecohydrology & Hydrobiology 1(3): 195-200

Domingues, P.M., Turk, P.E., Andrade, J.P. & Lee, P.G. 2001. Effects of enriched Artemia nauplii on production, survival and growth of the mysid shrimp Mysidopsis almyra Bowman 1964 (Crustacea: Mysidacea). Aquaculture Research 32: 599-603

Domingues, P.M., Kingston, T., Sykes, A. & Andrade, J.P. 2001. Growth of young cuttlefish, Sepia officinalis (Linnaeus, 1758) at the upper end of the biological distribution temperature range. Aquaculture Research 32: 923-930

Domingues, P.M., Sykes, A. & Andrade, J.P. 2001. The use of artemia or mysids as food for hatchlings of the cuttlefish Sepia officinalis. Effects on growth and survival throughout the life cycle. Aquaculture International 9(4): 319-331

Domingues, P.M., Turk, P.E., Andrade, J.P. & Lee, P.G. 2001. Effects of different food items on the culture of the mysid shrimp Mysidopsis almyra (Crustacea: Pericaridea) in a static water system. Aquaculture International 9(5): 393-400

Palma, J., Alarcon, J.A., Alvarez, C., Zouros, E., Magoulas, A. &  Andrade, J.P. 2001. Developmental stability and genetic heterozygosity in wild and cultured stocks of gilthead seabream (Sparus aurata). Journal of the Marine Biological Association of the United Kingdom 81(2): 283-288.

Chícharo, M. A., Chícharo, L. M., Galvão, H., Barbosa, A, Marques, M. H. Andrade, J. P., Esteves, E.; Gouveia, I.; Miguel, C. 2000. An ecohydrologic study of the Guadiana estuary (South Portugal). Revista de Biologia, SPECO 18: 141-158.

Domingues, P.M., Fores, R., Turk, P.E., Lee, P.G. & Andrade, J.P. 2000. Mysid culture: lowering costs with alternative diets. Aquaculture Research, 31: 719-728

Esteves, E., Chícharo, M.A., Pina, T. , Coelho, M.L. & Andrade J.P. 2000. Comparison of RNA/DNA ratios obtained with two methods for nucleic acid quantification in gobiid larvae. Journal of Experimental Marine Biology and Ecology 245(1): 43-55.

Esteves, E., Pina, T., Chícharo, M.A. & Andrade, J.P. 2000. The distribution of estuarine fish larvae: nutritional condition and co-occurrence with predators and prey. Acta Oecologica 21(3): 161-173.

Morato, T., Santos, R.S. & Andrade J. P. 2000. Feeding habits, seasonal and ontogenetic diet shift of blacktail comber, Serranus atricauda (Pisces: Serranidae), from the Azores, Northeastern Atlantic. Fisheries Research 49(1): 51-60.

Domingues, P.M., Turk, P.E., Andrade, J.P. & Lee, P.G. 1999. Culture of the mysid, Mysidopsis almyra (Bowman), (Crustacea: Mysidacea) in a static water system: effects of density and temperature on production, survival and growth. Aquaculture Research 30: 135-143

Estácio, S. ,Gonçalves, J. ,Porteiro, F. & Andrade, J.P. 1999. Comparison of fluorescent bands during staining of statoliths of the squid Loligo forbesi (Cephalopoda: Loliginidae). Journal of Molluscan Studies 65: 374-377

Andrade, J.P. 1998. Age and growth of the bastard sole, Microchirus azevia (Capello, 1868) (Pisces:Soleidae) from the South coast of Portugal. Fisheries Research 34: 205-208

Anibal, J.; Esteves, E.; Krug, H. & Silva, H.M. 1998. Age and growth of Alfonsino, Beryx splendens, from the Azores (Central Eastern Atlantic). Italian Journal of Zoology 65 (suppl.): 215-218

Domingues, P.M., Turk, P.E., Andrade, J.P. & Lee, P.G. 1998. Pilot-scale production of mysid shrimp in a static water system. Aquaculture International 6:387-402

Esteves, E.; Anibal, J.; Krug, H. & Silva, H.M. 1998. Contribution to the study of age and growth of bluemouth, Helicolenus dactylopterus dactylopterus (Delaroche, 1801), from the Azores Arquipélago. Life and Marine Sciences 15A: 83-95

Palma, J., Andrade, J.P., Paspastis, M., Divanach, P. & Kentouri, M. 1998. Morphometric characters in gilthead sea bream, Sparus aurata, red porgy, Pagrus pagrus and their hybrids. Italian Journal of Zoology 65 (suppl.): 435-439

Coelho, M.L., Domingues, P., Balguerias, E., Fernandez, M & Andrade, J.P. 1997. A comparative study of the diet of Loligo vulgaris (Lamarck, 1799) (Molusca: Cephalopoda) in the South coast of Portugal and the Saharan Bank (Central-East Atlantic). Fisheries Research 29: 245-255

Lopes, S., Coelho, M.L. &  Andrade, J. P. 1997. Potential fecundity evaluation of the squid Loligo vulgaris by analysis of oocyte development. Journal of the Marine Biological Association of the United Kingdom 77: 903-906

Villa, H., J. Quintela, M. Coelho, J. Icely & Andrade, J.P. 1997. Phytoplankton biomass and zooplankton abundance in South Portugal (Sagres) with a special reference to the spawning of Loligo vulgaris. Scientia Marina 61(2): 123-129

Andrade, J.P., Erzini, K. &  Palma, J., 1996. Gastric evacuation and feeding in the gilthead sea bream reared under semi-intensive conditions. Aquaculture International 4: 129-141

Bettencourt, V., Coelho, M. L., Andrade, J.P. & Guerra, A. 1996. Age and growth of the squid, Loligo vulgaris from the South coast of Portugal using statolith analysis. Journal of Molluscan Studies 62: 358-366

Marques, A., R. Coimbra, M. Sprung &  Andrade, J.P. 1996. Plankton and its environment: studies in shallow tidal creeks in a Ria Formosa salt marsh. Ciência Biológica - Biological Sciences, Portugal 16(1/2): 35-46

Coelho, M. L., Quintela, J., Bettencourt, V., Olavo, G., Villa, H. 1994. Population structure, maturation patterns and fecundity of the squid Loligo vulgaris from Southern Portugal. Fisheries Research 21: 87-102

Esteves, E.; Simões, P.; Silva , H.M. & Andrade, J.P. 1995. Ageing of swordfish, Xiphias gladius Linnaeus, 1758, from the Azores using vertebrae, spines and sagittae. Arquipélago, Life and Marine Sciences 13A: 39-51

Andrade, J.P. 1989. The flatfishes of the Ria Formosa (southern Portugal): results of a three-year survey. Scientia Marina 53(2-3): 671-676

Andrade, J.P. 1991. The role of the Ria Formosa on the maturation cycle of the female gonad of Solea senegalensis (Pisces, Soleidae). Proceedings of the IV International Symposium of Reproductive Physiology of Fish, Norwich 1:160

Andrade, J.P. 1992. Age, growth and population structure of Solea senegalensis (Pisces, Soleidae) in the Ria Formosa (Portugal). Scientia Marina 56(1): 35-41

Arruda, L.M., Andrade, J.P. & Cunha, M. 1988. Abundance, diversity and community structure of fish in the Aveiro lagoon (Portugal). Oceanologica Acta 11(3): 235-240